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Homology modeling
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11	Title of article: Scoring functions for ab initio protein structure prediction Suggested running head: Scoring functions for ab initio methods Authors: Enoch S. Huang, Ram Samudrala, Britt H. Park Department of Structura Add to Reading List Source URL: www.ram.org Language: English - Date: 2015-04-27 23:14:03 Chemistry Protein methods Biochemistry Threading Protein folding Homology modeling Sequence alignment Protein LSm Biology Bioinformatics Protein structure
12	Homology modeling of antiviral protein (CA-SRI) from Clerodendrum aculeatum L. Heena Gaur, Shuchi Negi, Divya Shrivastava, H. N. Verma, Abhijeet Singh and Devendra Jain* Institute of Biotechnology and Allied Sciences, Se Add to Reading List Source URL: www.biotconf.org Language: English - Date: 2014-05-21 17:42:44 Biology Chemistry Science Homology modeling Threading CASP Bioinformatics Protein methods Protein structure
13	Protein Engineering vol.11 no.11 pp.991–997, 1998 Determinants of side chain conformational preferences in protein structures Ram Samudrala1,2 and John Moult1,3 Add to Reading List Source URL: www.ram.org Language: English - Date: 2015-04-27 23:12:50 Bioinformatics Protein methods Stereochemistry Conformational isomerism Homology modeling Beta sheet Amino acid Alpha helix STING Chemistry Protein structure Biology
14	Conformational Splitting: A More Powerful Criterion for Dead-End Elimination N. A. PIERCE,1,∗ J. A. SPRIET,2 J. DESMET,2,† S. L. MAYO3 1 Division of Biology, California Institute of Technology, Pasadena, California Add to Reading List Source URL: www.piercelab.caltech.edu Language: English - Date: 2010-09-08 02:56:25 Dead-end elimination Mathematical optimization Bioinformatics Stereochemistry Conformational isomerism Protein design STING Homology modeling Computational chemistry Chemistry Protein methods Protein structure
15	Genome InformaticsPages) Add to Reading List Source URL: selab.janelia.org Language: English - Date: 2014-09-02 13:40:00 HMMER Sequence alignment FASTA BLAST Sequence analysis Hidden Markov model Smith–Waterman algorithm BLOSUM Homology modeling Bioinformatics Science Computational phylogenetics
16	proteins STRUCTURE O FUNCTION O BIOINFORMATICS An efficient conformational sampling method for homology modeling Rongsheng Han,1* Alejandra Leo-Macias,1y Daniel Zerbino,1{ Ugo Bastolla,1 Add to Reading List Source URL: ub.cbm.uam.es Language: English - Date: 2015-05-25 09:53:34
17	Microsoft Word - Portadilla1.docx Add to Reading List Source URL: www.formatex.info Language: English - Date: 2014-08-29 10:35:22 Science Cryo-electron microscopy Molecular dynamics Microscopy Docking Homology modeling Force field Structural biology X-ray crystallography Chemistry Protein structure Biology
18	Exact Rotamer Optimization for Protein Design D. BENJAMIN GORDON,1 GEOFFREY K. HOM,2 STEPHEN L. MAYO,3 NILES A. PIERCE4 1 Whitehead Institute for Biomedical Research, Cambridge, MassachusettsBiochemistry Option, C Add to Reading List Source URL: www.piercelab.caltech.edu Language: English - Date: 2010-09-08 02:56:26 Dead-end elimination Mathematical optimization Bioinformatics Stereochemistry Conformational isomerism Protein design Resolution STING Homology modeling Chemistry Protein methods Protein structure
19	Clustering 3D-structures of Small Amino Acid Chains for Detecting Dependences from their Sequential Context in Proteins Alexander Hinneburg, Daniel A. Keim Institute of Computer Science University of Halle, Germany hinne Add to Reading List Source URL: fusion.cs.uni-magdeburg.de Language: English - Date: 2002-10-04 04:14:28 Protein methods Science Bioinformatics Conformational isomerism Protein fragment library Protein folding Homology modeling Cluster analysis Dihedral angle Chemistry Protein structure Biology
20	Research Journal of Recent Sciences _________________________________________________ ISSNVol. 2(ISC-2012), Res. J. Recent. Sci. Role of Proteus mirabilis in Caffeine Degradation – A Preliminary Add to Reading List Source URL: www.isca.in Language: English - Date: 2013-10-04 03:56:41 Protein methods Science Protein structure Computational phylogenetics Caffeine Protein secondary structure Homology modeling Threading Decaffeination Bioinformatics Biology Chemistry

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